Home | GBrowse | GBlast | Assembly | Blast Table | ORFs | Download | What's New | Getting Started | Login | Assembly Data: bplicatilisa

Brachionus plicatilis
Sequencing Browser

This current version is a development version constructed using the Generic Model Organism Database paradigm.


 
[Help]

Rotifers

Rotifera is one of the largest micro-invertebrate phyla, in terms of both biomass and number of species. Its members are major components of freshwater and coastal marine ecosystems throughout the world, and are the chief non-arthropod component of most freshwater pelagic communities. Most rotifers are smaller than 1mm, but have ganglia, muscles, photo-, chemo-, and tactile sensory organs; structures for crawling, feeding, and swimming; digestive and secretory organs; and ovaries. The two major rotifer groups, Monogononta and Bdelloidea, are each significant for their unusual reproductive modes: bdelloids appear to be obligately asexual, reproducing only through mitotic division of germ cells; monogonont rotifers are facultatively sexual, generally reproducing through mitotic division of germ cells but entering a meiotic sexual phase in response to environmental cues.
The phylum is allied with other micro-invertebrate groups such as Acanthocephala, Gnathostomulida, Micrognathozoa, and Cycliophora in the superphylum Gnathifera, a sister- or basal group to the Lophotrochozoa. Unlike other gnathiferan fauna, many rotifer species can easily be cultured in axenic conditions in quantities suitable for large-scale biochemical and molecular genetic studies, making rotifers the optimal model system for studying this basal animal assemblage. Among rotifers, the most well-studied are the euryhaline rotifers of the Brachionus plicatilis species complex. Their widespread distribution and ease of culturing make this group a useful model system for studies of population dynamics, speciation, the evolution of sexual reproduction, and ecotoxicology. The complex is also an important live food for the initial stage of larval rearing of marine fishes.

Summary Statistics

Total Number of Isolated ESTs236
Total Number of cDNA Assemblies175
Total Number of Incomplete cDNAs61
Statistics last updated Tue Jan 2 10:14:48 EST 2007
Detailed statistics: Assembly

 

Brachionus plicatilis sensu stricu strin NH1L

Library A: unnormalized mixed culture

This is an EST database created from partial sequencing of an unnormalized cDNA library made from a culture of Brachionus plicatilis sensu strictu strain NH1L (Tokyo) containing males and mictic and amictic females. The library was constructed by ligating EcoRI/NotI linkers to cDNA followed by ligation into lambda-ZAPII arms and subsequent excission of pBSKII (Stratagene).
All sequence data was examined independently using either DNASIS Pro software (Hitachi software, Japan) or unix shell scripts developed at the Josephine Bay Paul Center combining phred, phrap, lucy, trimseq, and trimest. Assemblies were compared and discrepancies examined and reconciled by hand.

 

 

Funding provided by the United States National Science Foundation Emerging Frontiers: Biocomplexity in the Environment Program (EF-0412674)

 

Scientific enquiries should be sent to David Mark Welch

This database is hosted by the Josephine Bay Paul Center in Comparative Molecular Biology and Evolution. Bug reports and technical problems should be reported to David Mark Welch.